{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "## Potential confounders\n", "Can some of this variance be explained by the differences in methodological choices and experimental conditions we mention? The number of studies is limited for a quantitative evaluation, but we can get a qualitative idea using bar plots and scatter plots organized by each condition.\n", "\n", "```{admonition} Figure 7\n", ":class: tip\n", "Distributions of R2 values in relation to the reference techniques, pathology and tissue types are visualized using box plots. You can mouse over markers to see the studies they are drawn from.\n", "```" ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "ExecuteTime": { "end_time": "2020-10-05T19:20:08.152798Z", "start_time": "2020-10-05T19:20:03.843434Z" }, "tags": [ "hide_input" ] }, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd\n", "\n", "import plotly.graph_objects as go\n", "from IPython.core.display import display, HTML\n", "from plotly.offline import plot\n", "import plotly.express as px\n", "import plotly.colors\n", "from plotly.subplots import make_subplots\n", "\n", "from rpy2.robjects.packages import importr\n", "import rpy2.robjects\n", "import subprocess\n", "subprocess.call('curl https://raw.githubusercontent.com/Notebook-Factory/brand/main/insertLogo.py --output /tmp/insertLogo.py', shell=True)\n", "%run /tmp/insertLogo.py" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Figure 7" ] }, { "cell_type": "code", "execution_count": 11, "metadata": { "tags": [ "hide_input" ] }, "outputs": [ { "data": { "text/html": [ "\n", "\n", "\n", "
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